Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015931393.1_cds_XP_016478221.1_69884
CDS Infomation

[gene=LOC107799596] [db_xref=GeneID:107799596] [protein=ion channel DMI1-like isoform X3] [protein_id=XP_016478221.1] [location=join(71241..71339,72166..72234,72490..73110,74078..74260,74475..74534,74658..74861,75955..76203,80099..80197,82747..82941,83470..83562,83864..84178)] [gbkey=CDS]
Sequence

ATGCTTTGTCAATTCAAGTCTCGAATCCAGCTTCTTCTTCAGCTTTGTCATCAGAGTCTT
CTACTTCAGCTAACTCCTCTAATGCTCGAAGAGCTTCTGCTTAAATTTGTTTGTACATTA
TCAGTATCTCACACATTATATTTGCAGAATGAAGTCTCTAAGCTTCAGGAGGAGAATGTT
AGTCTTCGCAGAGTTTGTAGCCATGTTGATCTTGCCAGTGCTGGTATCACAGAGCTAGAA
GAATTTAATTCACTAGTGTATTTTGGGAATGCTGACAGTAGAATAGTTGCTCTGTACATG
GTGGTTTTCATCCTCGTTACTCCTTTTGTATTTTACAAATATCTTGACTCTCTTCCGAGA
ATAATTGATCTCTTAAAGAGGAAAACTACCAAAAAGGAGGAGGTTCCATTGAAGAAAAGG
ATTGCTTACATGGTGGATGTGTGTTTCTCAGTTTACCCTTATGCAAAGCTGCTTGCACTT
CTCTTTGCCACTCTCTTTCTAATTGGTTATGGAGCATTGGCACTTTATGCCGTTGGTGAT
GGCAGCTTTACTGAAGCTCTTTGGCTTTCTTGGAGCTTCGTAGCAGACTCTGGAACCCAT
GCTGATATGGCTGGTGCAGGGCCAAGGATAGTTTCAGTTTTGATAACCTCAGGAGGCATG
CTCATATTTGCTATGATGCTGGGGCTTGTTTCAGATGCTATTTCAGAAAAAGTGGATTCT
TTACGGAAAGGAAAGAGTGAGGTGATTGAAAGTAATCACATTCTTATTCTTGGGTGGAGT
GATAAATTGGGGTCACTTTTGAAGCAGCTAGCAATAGCAAACAAGAGCATTGGTGGTGGT
GTTGTCGTTGTGCTTGCGGAAAGAGACAAAGAGGAGATGGAGATGGACATAGCAAAGTTA
GAATTCGACTTCATGGGAACTTCAGTGATCTGCAGAAGTGGCAGTCCGCTAATACTTGCT
GATTTGAAAAGGGTCTCAGTCTCGAAAGCACGTGGAATCATTGTCTTAGCATCTGATGAG
AATGCTGATCAGAGTGATGCACGTGCTTTAAGGGTTGTACTTAGCCTAACTGGAGTAAGA
GAGGGGTTGAGAGGTCATGTTGTTGTGGAGATGAGTGATCTCGACAACGAACCGTTAGTG
AAGCTTGTTGGTGGTGAACTTATTGAAACAGTTGTTGCTCATGATGTGATTGGGAGGTTG
ATGATACAATGCGCTTTGCAGCCTGGCCTTGCTCAGATTTGGGAAGACATTTTGGGCTTT
GAAAATGCAGAATTTTACATTAAACGGTGGCCTCAATTGGATGGTGTACCCTTTGAAGAT
GTACTGGTATCATTTCCAGATGCAATTCCTTGTGGAGTTAAGGTTGCTGCTGATGGGGGG
AAGATTATCATAAATCCTGATGATAGATATGTTCTAAAAGAAGGTGATGAAGTCCTTGTC
ATAGCTGAAGATGATGATACCTATGCACCAGGTCCCTTGCCAGAGGTAAATAAAGGCCTA
TTCCCTAGGATAGCTGATCCTCCAAAATATCCAGAAAGAATCTTATTCTGTGGTTGGAGA
CGTGATATTGACGATATGATTATGGTGCTAGAGGCATTATTGGCTCCAGGGTCTGAATTA
TGGATGCTTAATGAGGTTCCTGAGAAAGATAGAGAAAGGAAGTTGACTGATGGGGGCCTT
GATATCTCAGGACTGGAGAACATAAAACTTGTCCATCATGTGGGAAATGCAGTGATTAGA
CGTCATTTGGAGGGTCTTCCTTTGGAGACATTTGATTCGATTCTGATTCTTGCAGATGAA
TCTGTTGAAGACTCCATTGTTCACTCTGATTCACGGTCTCTTGCCACCCTCCTCCTCATC
CGAGATATCCAGTCGAAGCGTCTTCCTAATAAAGATTCTAGGTCGATTCCTCTACGGCAT
TCTGTGTTTTCTCAGAGCTCCTGGATTCGTGAAATGCAGCAGGCGTCAGACAGATCAATA
ATAATAAGTGAGATATTGGATTCTAGGACAAGAAATCTTGTTTCAGTCTCTCGAATAAGC
GATTACGTGCTATCAAATGAACTGGTGAGCATGGCACTTGCAATGGTAGCAGAAGACAAA
CAGATTAATCGTGTGCTAGAAGAATTGTTTGCGGAAGAGGTATTTGTTTTTACCTTTATT
TACTTATATTCTGAATGCATGCTTTAA

Peptide Sequence

PEP ID

XP_016478221.1
PEP Infomation

PREDICTED: ion channel DMI1-like isoform X3 [Nicotiana tabacum]
Sequence

MLCQFKSRIQLLLQLCHQSLLLQLTPLMLEELLLKFVCTLSVSHTLYLQNEVSKLQEENV
SLRRVCSHVDLASAGITELEEFNSLVYFGNADSRIVALYMVVFILVTPFVFYKYLDSLPR
IIDLLKRKTTKKEEVPLKKRIAYMVDVCFSVYPYAKLLALLFATLFLIGYGALALYAVGD
GSFTEALWLSWSFVADSGTHADMAGAGPRIVSVLITSGGMLIFAMMLGLVSDAISEKVDS
LRKGKSEVIESNHILILGWSDKLGSLLKQLAIANKSIGGGVVVVLAERDKEEMEMDIAKL
EFDFMGTSVICRSGSPLILADLKRVSVSKARGIIVLASDENADQSDARALRVVLSLTGVR
EGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCALQPGLAQIWEDILGF
ENAEFYIKRWPQLDGVPFEDVLVSFPDAIPCGVKVAADGGKIIINPDDRYVLKEGDEVLV
IAEDDDTYAPGPLPEVNKGLFPRIADPPKYPERILFCGWRRDIDDMIMVLEALLAPGSEL
WMLNEVPEKDRERKLTDGGLDISGLENIKLVHHVGNAVIRRHLEGLPLETFDSILILADE
SVEDSIVHSDSRSLATLLLIRDIQSKRLPNKDSRSIPLRHSVFSQSSWIREMQQASDRSI
IISEILDSRTRNLVSVSRISDYVLSNELVSMALAMVAEDKQINRVLEELFAEEVFVFTFI
YLYSECML

Transcript Sequence

Gene sequence data has not been registered.